RnoEX0005849 @ rn6
Exon Skipping
Gene
ENSRNOG00000003550 | Acbd6
Description
acyl-CoA binding domain containing 6 [Source:RGD Symbol;Acc:1305030]
Coordinates
chr13:73265724-73334077:+
Coord C1 exon
chr13:73265724-73265813
Coord A exon
chr13:73319254-73319284
Coord C2 exon
chr13:73333795-73334077
Length
31 bp
Sequences
Splice sites
3' ss Seq
CGTTTTTGTTCTTTTTGTAGGAC
3' ss Score
10.67
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GGCAGAGCTCTGCTCCACTGGGCATGCGATCGAGGACATAAGGAGCTGGTGAAAGTCTTGCTACAGTGTGAAGCCGGCATTAATTGTCAG
Seq A exon
GACAATGAAGGTCAGACAGCGCTTCATTATG
Seq C2 exon
CTGCTGCCTGCGAGTTTTCGGACATTGTGGAGCTGCTGCTCCAGTCTGGCGCTGACCCCACTCTCCGAGACCAAGATGGCTGTTTGCCAGAAGAGGTGACAGGCTGTAAAGCGGTCTCTCTGGTGCTGCAGCTGCACAGAGCTGGCAAGGCTTGATCCAAAGCCTGGAGCAGCACAGTTTGGCAGAATAGGACTTCCAGGAGAAAAGACACTGCAAAAATAACTTCTTTTACCATCCATCTTTGGTATGCATTGGCTAATAAAATCAGTTCGAGGAACTGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003550-'25-28,'25-26,31-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(31.2=100)
A:
PF127962=Ank_2=FE(10.8=100)
C2:
PF127962=Ank_2=PD(24.7=44.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAGTGTGAAGCCGGCATT
R:
AAACAGCCATCTTGGTCTCGG
Band lengths:
115-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]