GgaEX0005257 @ galGal3
Exon Skipping
Gene
ENSGALG00000003924 | ACBD6
Description
NA
Coordinates
chr8:6254950-6286267:+
Coord C1 exon
chr8:6254950-6255039
Coord A exon
chr8:6283438-6283468
Coord C2 exon
chr8:6285835-6286267
Length
31 bp
Sequences
Splice sites
3' ss Seq
CAAGTCTTGTTCTCTTTCAGGAT
3' ss Score
10.99
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
Exon sequences
Seq C1 exon
GGCAGGGCTCTGCTCCACTGGGCATGCGACAGAGGACACAAGGAGCTCGTTTCAGTACTGTTGCAACACGCTGCCGATGTTAACAGCCAG
Seq A exon
GATGGGGAAGGCCAGACTGCGCTCCATTACG
Seq C2 exon
CCTCCGCCTGCGAGTTCTCCGACATCGTGGAGCTGCTGCTGCAATCCGGGGCCGACCCCACACTGCGGGACAAGGAGGGCTGCCTGCCAGAGGAGGTGACAGACTGTAAGGCCATCACGTCGGCCCTGCAGCGGCACACTGCCGGCAAGGTGTAGCCGTGCCATGCGGCCGGACGGGTACCGTCGTGCAGCAAAGCCCTGCTCTCCCCCAAGCAGGCTGAGGGTCAGGGTTTTGCATGCTCTGACATCAAGCAGTATTCCGAGGGAGGGAGGGGGCACGGGGCTTGGATAGGGCCCCGTGTTTTAGTGCACACTGCCAGGGAGGGCTGCTGGCACGGCCGGGGCCGTGGGGCTGCGTTACCGTTTGGGTTGTTTTTTTCTCTTGGGTCCAAGCAAAATATTATAAATAAAACAAGCACAGTGTTGGGACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003924-'9-19,'9-17,11-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.182 C2=0.020
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(31.2=100)
A:
PF127962=Ank_2=FE(10.8=100)
C2:
PF127962=Ank_2=PD(24.7=44.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCGATGTTAACAGCCAG
R:
ACAGTCTGTCACCTCCTCTGG
Band lengths:
128-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]