MmuEX0003424 @ mm9
Exon Skipping
Gene
ENSMUSG00000033701 | Acbd6
Description
acyl-Coenzyme A binding domain containing 6 [Source:MGI Symbol;Acc:MGI:1919732]
Coordinates
chr1:157471999-157534363:+
Coord C1 exon
chr1:157471999-157472088
Coord A exon
chr1:157524334-157524364
Coord C2 exon
chr1:157534079-157534363
Length
31 bp
Sequences
Splice sites
3' ss Seq
TTATTTGTGTTCTTTTATAGGAC
3' ss Score
12.55
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GGCAGAGCTCTGCTCCACTGGGCATGTGACCGAGGACATAAGGAACTGGTGAAAGTCTTGCTACAGTATGAAGCTGGCATTAATTGTCAG
Seq A exon
GACAACGAAGGTCAGACAGCTCTTCATTATG
Seq C2 exon
CCGCTGCCTGCGAGTTTTTGGACATCGTGGAACTGCTGCTCCAGTCTGGCGCTGACCCCACCCTCCGAGACCAAGACGGCTGCTTGCCAGAAGAGGTGACGGGCTGCAAAGCGGTCTCTCTGCTGCTGCAGCGGCACAGAGCTAGCAAGGCTTGATCCAAAGCCTGAAGAAGCACAGTTTGGCAGACTAGGACTTCCGGGATAAAAGAAACTGCAAAAATAATACTTCTTTTACCGCCCATCTTTGGTATGCATTGGCTAATAAAATCAGTTCGAGGAACTGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033701_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(31.2=100)
A:
PF127962=Ank_2=FE(10.8=100)
C2:
PF127962=Ank_2=PD(24.7=44.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCATGTGACCGAGGACATA
R:
GAGCAGCAGTTCCACGATGTC
Band lengths:
112-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: