GgaEX0005702 @ galGal3
Exon Skipping
Gene
ENSGALG00000004286 | COL13A1
Description
NA
Coordinates
chr6:12100495-12106680:+
Coord C1 exon
chr6:12100495-12100521
Coord A exon
chr6:12103137-12103187
Coord C2 exon
chr6:12106645-12106680
Length
51 bp
Sequences
Splice sites
3' ss Seq
CTTTCCCCGTCTCTCTGCAGGGT
3' ss Score
13.13
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GGACTAAAAGGGCAACCTGGAGAGAAG
Seq A exon
GGTGCTCCAGGAGAAGCAGGCATGTCTATCATTGGGCCCCGTGGTCCACCC
Seq C2 exon
GGACAGCCTGGAACAAGAGGTTTTCCTGGATTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004286-'2-4,'2-2,3-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(20.5=47.1),PF0139113=Collagen=PU(11.5=41.2)
A:
PF0139113=Collagen=PD(20.5=47.1),PF0139113=Collagen=PU(11.5=41.2)
C2:
PF0139113=Collagen=FE(18.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]