RnoEX0022835 @ rn6
Exon Skipping
Gene
ENSRNOG00000000552 | Col13a1
Description
collagen type XIII alpha 1 chain [Source:RGD Symbol;Acc:1595704]
Coordinates
chr20:31514229-31529594:-
Coord C1 exon
chr20:31529568-31529594
Coord A exon
chr20:31521061-31521111
Coord C2 exon
chr20:31514229-31514264
Length
51 bp
Sequences
Splice sites
3' ss Seq
CACCCTTTGTCTCCCCACAGGGT
3' ss Score
13.21
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GGCCCCACTGGAAGACCTGGACTCCCA
Seq A exon
GGTGCCCCTGGAGATGCGGGGATATCCATCATCGGGCCACGAGGCCCCCCT
Seq C2 exon
GGCCAGCCAGGTACCCGAGGCTTCCCTGGATTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000552-'4-9,'4-7,7-9
Average complexity
C2
Mappability confidence:
91%=83=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(15.7=100)
A:
PF0139113=Collagen=PD(15.7=47.1),PF0139113=Collagen=PU(8.3=29.4)
C2:
PF0139113=Collagen=FE(18.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACTGGAAGACCTGGACTC
R:
CGGGAATCCAGGGAAGCCTC
Band lengths:
60-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]