BtaEX0009567 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011741 | COL13A1
Description
Bos taurus collagen, type XIII, alpha 1 (COL13A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001105433]
Coordinates
chr28:26328296-26338364:+
Coord C1 exon
chr28:26328296-26328322
Coord A exon
chr28:26330967-26331017
Coord C2 exon
chr28:26338329-26338364
Length
51 bp
Sequences
Splice sites
3' ss Seq
CCTCTTTCTCTCCCACACAGGGC
3' ss Score
11.19
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GGAGGAAAGGGCCAACCAGGCGAGAAG
Seq A exon
GGCGCCCCAGGAGATGCCGGCATGTCCATCATTGGTCCCCGCGGCCCCCCT
Seq C2 exon
GGTCAGCCGGGCACCCGGGGTTTTCCAGGATTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011741-'6-9,'6-8,7-9
Average complexity
C1
Mappability confidence:
88%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(15.7=100)
A:
PF0139113=Collagen=PD(15.7=47.1),PF0139113=Collagen=PU(10.0=35.3)
C2:
PF0139113=Collagen=FE(18.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAAGGGCCAACCAGG
R:
GGAAATCCTGGAAAACCCCGG
Band lengths:
61-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development