GgaEX0006238 @ galGal3
Exon Skipping
Gene
ENSGALG00000004604 | CCBL1
Description
NA
Coordinates
chr17:5916617-5918089:-
Coord C1 exon
chr17:5918031-5918089
Coord A exon
chr17:5917390-5917543
Coord C2 exon
chr17:5916617-5916766
Length
154 bp
Sequences
Splice sites
3' ss Seq
TCCTCCTTCCATCTCTCTAGGGT
3' ss Score
11.8
5' ss Seq
TTCGTGCGT
5' ss Score
3.83
Exon sequences
Seq C1 exon
GCAAAAATGTCAAGGCCGGTGCAAGCCCGGAGGCTGGAGGGAGTAGATAAGAATATCTG
Seq A exon
GGTGGAGTTCGTAAAACTGGCTGCCACCTACTCCACGGTCAACCTGGGCCAGGGCTTCCCCGACTTCCCCCCACCAGAGTTTTTGAAGGAGGCGTTCAGCAGAGCGGTCAGCGGGGAGGAGGAGCACATGCTGCACCAGTACACCCGTGCCTTC
Seq C2 exon
GGCCACCCACCGCTGGTGAAAATCCTCGCCCAGCTTTTTGGGAAGCTGCTCGGACGAGACCTGGATCCTATGACCAATGTGATGGTGACTGTGGGGGCATACCAGGCCCTTTTCTGCTGCTTCCAGGCTTTCATTGATGAAGGCGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004604-'5-4,'5-3,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0015516=Aminotran_1_2=PU(10.6=78.8)
C2:
PF0015516=Aminotran_1_2=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAAATGTCAAGGCCGGTGC
R:
TCGCCTTCATCAATGAAAGCCT
Band lengths:
204-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]