MmuEX0009443 @ mm9
Exon Skipping
Gene
ENSMUSG00000039648 | Ccbl1
Description
cysteine conjugate-beta lyase 1 [Source:MGI Symbol;Acc:MGI:1917516]
Coordinates
chr2:30043735-30049632:-
Coord C1 exon
chr2:30049574-30049632
Coord A exon
chr2:30047445-30047592
Coord C2 exon
chr2:30043735-30043884
Length
148 bp
Sequences
Splice sites
3' ss Seq
GACTCTCTCTTTGTTGCCAGGGT
3' ss Score
7.72
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
CTCACCATGTCCAAACAGCTGCAGGCTCGAAGGCTGGAAGGGATCGATCACAACCCCTG
Seq A exon
GGTGGAGTTTACCAGACTGTCCAAGGAGTATGATGTCGTGAACTTGGGCCAGGGCTTCCCTGACTTCTCACCGCCAGACTTTGCTGTGCAAGCTTTTCAGCAGGCTACCACTGGGAACTTCATGCTCAACCAGTACACCTCAGCGTTT
Seq C2 exon
GGTTACCCTCCACTGACAAAGATCCTGGCAAGTTTCTTTGGCAAGCTGCTGGGACAGGAGATGGACCCACTCAAGAATGTGCTGGTGACAGTGGGAGCCTATGGGGCCTTGTTCACAGCCTTTCAGGCCCTGGTGGATGAAGGAGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039648-'4-9,'4-7,7-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0015516=Aminotran_1_2=PU(10.1=78.0)
C2:
PF0015516=Aminotran_1_2=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCATGTCCAAACAGCTGC
R:
TCGTCTCCTTCATCCACCAGG
Band lengths:
207-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: