DreEX6021826 @ danRer10
Exon Skipping
Gene
ENSDARG00000100818 | CCBL2 (2 of 5)
Description
cysteine conjugate-beta lyase 2 [Source:HGNC Symbol;Acc:HGNC:33238]
Coordinates
chr6:25116282-25121159:+
Coord C1 exon
chr6:25116282-25116346
Coord A exon
chr6:25116429-25116573
Coord C2 exon
chr6:25121010-25121159
Length
145 bp
Sequences
Splice sites
3' ss Seq
ATGTTTCTTCTGTTGTTCAGGGT
3' ss Score
8.27
5' ss Seq
TTTGTATGT
5' ss Score
2.51
Exon sequences
Seq C1 exon
TATAACATGTCATCCATAAAACACAAAAATGCAAAGAGAATAGAAGGCCTGGACAAGAATGTATG
Seq A exon
GGTGGCCTTCACATCTCTGGCTGCAGACCCTACCGTTGTCAATCTTGGACGGGGTTACCCAGACATTCCTCCTCCTTTATATGTGAAAGAGGGACTTGCTCAAGCTGCTCTGGTAGACCAGCTGAACCAGTCCACACGCAGCTTT
Seq C2 exon
GGCCACCCTACACTGGTTAAAGCTCTATCAAAAGTGTATGGAAAAGTCTGTGATCGTCAGCTTGACCCTTTTAAGGAAATCTTGGTCACAGTAGGTGCATATGGTTCTTTGTTCAGCACTATGCAGGCTCTGGTTGAGGAAGGAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100818-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0015516=Aminotran_1_2=PU(14.7=77.6)
C2:
PF0015516=Aminotran_1_2=FE(12.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATGTCATCCATAAAACACAAAAA
R:
CATCTCCTTCCTCAACCAGAGC
Band lengths:
210-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]