HsaEX6031994 @ hg19
Exon Skipping
Gene
ENSG00000137944 | CCBL2
Description
cysteine conjugate-beta lyase 2 [Source:HGNC Symbol;Acc:33238]
Coordinates
chr1:89430512-89435150:-
Coord C1 exon
chr1:89435092-89435150
Coord A exon
chr1:89434353-89434497
Coord C2 exon
chr1:89430512-89430661
Length
145 bp
Sequences
Splice sites
3' ss Seq
AGTATTTTTTTCAATCTTAGGAT
3' ss Score
7.95
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
AAAATGTCACTGAAATTCACAAATGCAAAACGGATTGAAGGACTTGATAGTAATGTGTG
Seq A exon
GATTGAATTTACCAAATTGGCTGCAGACCCTTCTGTTGTGAATCTTGGCCAAGGCTTTCCAGATATATCCCCTCCTACATATGTAAAAGAAGAATTATCAAAGATTGCAGCAATCGATAGCCTGAATCAGTATACACGAGGCTTT
Seq C2 exon
GGCCATCCATCACTTGTGAAAGCTCTGTCCTATCTGTATGAAAAGCTTTATCAAAAGCAAATTGATTCAAATAAAGAAATCCTTGTGACAGTAGGAGCATATGGATCTCTTTTTAACACCATTCAAGCATTAATTGATGAGGGAGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137944-'3-7,'3-6,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0015516=Aminotran_1_2=PU(19.1=77.6)
C2:
PF0015516=Aminotran_1_2=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCACTGAAATTCACAAATGCA
R:
TCATCTCCCTCATCAATTAATGCT
Band lengths:
204-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)