RnoEX0047943 @ rn6
Exon Skipping
Gene
ENSRNOG00000043426 | Kyat3
Description
kynurenine aminotransferase 3 [Source:RGD Symbol;Acc:1359262]
Coordinates
chr2:248661597-248665279:+
Coord C1 exon
chr2:248661597-248661655
Coord A exon
chr2:248662564-248662708
Coord C2 exon
chr2:248665130-248665279
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTGTTTTTAATCAGGGT
3' ss Score
10.08
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
AAAATGGCTTTGAGATTCAAAAATGCCAAACGAATCGAAGGCCTGGACCAAAACGTGTG
Seq A exon
GGTTGAATTTACCAAGTTGGCCGCGGATTCTTCTGTGGTGAATCTTGGACAAGGTTTTCCTGATATAACCCTTCCTTCATATGTACAAGAAGAATTGTCAAAGGCGGCATTTATTGATAACCTGAATCAATACACAAGGGGCTTT
Seq C2 exon
GGTCATCCATCACTTGTGAAAGCGCTATCCTGCTTATACGGAAAGATTTATCAAAAGCAAATTGATCCAAATGAAGAAATTCTTGTGACGGTGGGGGGATATGGATCGCTCTTTAATGCCATCCAAGGCTTGGTGGACCCAGGAGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043426-'6-7,'6-5,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0015516=Aminotran_1_2=PU(28.6=77.6)
C2:
PF0015516=Aminotran_1_2=FE(36.8=100)
Main Skipping Isoform:
ENSRNOT00000067165fB7513
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTGAGATTCAAAAATGCC
R:
TTCATCTCCTGGGTCCACC
Band lengths:
204-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]