GgaEX1013193 @ galGal3
Exon Skipping
Gene
ENSGALG00000006188 | CCBL2
Description
NA
Coordinates
chr8:15836657-15839774:+
Coord C1 exon
chr8:15836657-15836715
Coord A exon
chr8:15837988-15838132
Coord C2 exon
chr8:15839625-15839774
Length
145 bp
Sequences
Splice sites
3' ss Seq
ATGTATTTTTTTTCTGTTAGGGT
3' ss Score
8.29
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
ACAATGGCCTTTAGACACAAAAACACAAGACGAATTGAAGGCCTTGATAGCAATGTGTG
Seq A exon
GGTTGAATTTACAAAGGTGGCAGCAGATCCCTCAATTGTTAATCTTGGTCAAGGCCTTCCTGATATATGCCCTCCCAGCTATGTTAAAGAAGAGCTGGCAAAAGCAGCAGCAGTTGACAGACTGAACCAGTACACACGAGGCTTT
Seq C2 exon
GGGCATCCATCGCTGGTGAAAGCCTTGTCTCAAGTATATGAGAGAGTTTGTGGAAGAAAGATTGATCCTCTCACAGATATCCTGGTGACAGTAGGAGGTTATGGATCTCTCTTTAGTACAATACAGGCTTTAATTGAAGAGGGAGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006188-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0015516=Aminotran_1_2=PU(9.9=77.6)
C2:
PF0015516=Aminotran_1_2=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCCTTTAGACACAAAAACACA
R:
TCTCCCTCTTCAATTAAAGCCTGT
Band lengths:
202-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]