MmuEX6074475 @ mm9
Exon Skipping
Gene
ENSMUSG00000040213 | Ccbl2
Description
cysteine conjugate-beta lyase 2 [Source:MGI Symbol;Acc:MGI:2677849]
Coordinates
chr3:142381340-142386228:+
Coord C1 exon
chr3:142381340-142381398
Coord A exon
chr3:142383325-142383469
Coord C2 exon
chr3:142386079-142386228
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTTGTTTTTAATCAGGGT
3' ss Score
9.14
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
AAAATGGCTTTGAAATTCAAAAACGCCAAACGAATCGAAGGCCTGGACAGCAATGTGTG
Seq A exon
GGTTGAATTTACTAAGTTGGCTGCGGATCCTTCTGTGGTGAACCTTGGACAAGGCTTTCCAGATATATCCCCTCCTTCATACGTAAAAGAAGAGTTATCAAAGGCTGCATTTATTGATAACATGAATCAATACACAAGAGGCTTT
Seq C2 exon
GGTCATCCAGCACTTGTGAAAGCTCTGTCCTGCTTATATGGAAAGATTTATCAACGTCAAATTGATCCAAACGAAGAAATCCTTGTGGCCGTGGGGGCATATGGATCTCTCTTTAACTCCATCCAAGGATTGGTGGACCCAGGAGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040213-'6-8,'6-5,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0015516=Aminotran_1_2=PU(16.6=77.6)
C2:
PF0015516=Aminotran_1_2=FE(12.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTGAAATTCAAAAACGCC
R:
TTCATCTCCTGGGTCCACC
Band lengths:
204-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: