HsaEX6031994 @ hg38
Exon Skipping
Gene
ENSG00000137944 | KYAT3
Description
kynurenine aminotransferase 3 [Source:HGNC Symbol;Acc:HGNC:33238]
Coordinates
chr1:88964829-88969467:-
Coord C1 exon
chr1:88969409-88969467
Coord A exon
chr1:88968670-88968814
Coord C2 exon
chr1:88964829-88964978
Length
145 bp
Sequences
Splice sites
3' ss Seq
AGTATTTTTTTCAATCTTAGGAT
3' ss Score
7.95
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
AAAATGTCACTGAAATTCACAAATGCAAAACGGATTGAAGGACTTGATAGTAATGTGTG
Seq A exon
GATTGAATTTACCAAATTGGCTGCAGACCCTTCTGTTGTGAATCTTGGCCAAGGCTTTCCAGATATATCCCCTCCTACATATGTAAAAGAAGAATTATCAAAGATTGCAGCAATCGATAGCCTGAATCAGTATACACGAGGCTTT
Seq C2 exon
GGCCATCCATCACTTGTGAAAGCTCTGTCCTATCTGTATGAAAAGCTTTATCAAAAGCAAATTGATTCAAATAAAGAAATCCTTGTGACAGTAGGAGCATATGGATCTCTTTTTAACACCATTCAAGCATTAATTGATGAGGGAGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137944-'7-11,'7-9,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0015516=Aminotran_1_2=PU(16.5=77.6)
C2:
PF0015516=Aminotran_1_2=FE(12.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCACTGAAATTCACAAATGCA
R:
TCATCTCCCTCATCAATTAATGCT
Band lengths:
204-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains