GgaEX0007053 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:237625-243288:+
Coord C1 exon
chr8_random:237625-237731
Coord A exon
chr8_random:242206-242425
Coord C2 exon
chr8_random:243168-243288
Length
220 bp
Sequences
Splice sites
3' ss Seq
TTATCTTGTGTGTCTTGTAGGTT
3' ss Score
11.55
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
GTAAACAGATTAGCAAAGGATTGGGACTGAACGAATTGCTGAATATCCACAACTCCGCAAAAGTAGTAAATGTCAAAGATCCAGACCCTGGAACATGGACAATAAAG
Seq A exon
GTTGCGTTGTCTCAGAACAAAAAAATCAAAGTAGATTCTACTAAATTCAGATTAGATCTTGGTATTGTAGACATCACTCTTCACAGCCGTTCAAGTCTTGAGTTTTTTTCCTGCTGCTCTGGATGATGTTGTCCATGGGTTTGTCAGTTAAGCATATGTAACATCTAATGCTGTGCTCAGCACAGCAGTTTTTCCTAATGGCTGGGCAGTATGAAAGTAG
Seq C2 exon
ACATCGAGCAGCGGAAGGCACTCTGTTCGGATCACGGGTCTCAGCACTATTGAATTTCGAGCTGGGTTTTCCAAGAAGTCAACGTTAGACTTCAAGAAAACATCCAGCAGACCAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'10-13,'10-12,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAACAGATTAGCAAAGGATTGGGA
R:
CTTGCACTGGTCTGCTGGATG
Band lengths:
228-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]