GgaEX0007054 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:237625-244051:+
Coord C1 exon
chr8_random:237625-237731
Coord A exon
chr8_random:243168-243288
Coord C2 exon
chr8_random:243788-244051
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTCAACTGTTGCCTTTTCAGACA
3' ss Score
9.52
5' ss Seq
AAGGTTTAT
5' ss Score
4.64
Exon sequences
Seq C1 exon
GTAAACAGATTAGCAAAGGATTGGGACTGAACGAATTGCTGAATATCCACAACTCCGCAAAAGTAGTAAATGTCAAAGATCCAGACCCTGGAACATGGACAATAAAG
Seq A exon
ACATCGAGCAGCGGAAGGCACTCTGTTCGGATCACGGGTCTCAGCACTATTGAATTTCGAGCTGGGTTTTCCAAGAAGTCAACGTTAGACTTCAAGAAAACATCCAGCAGACCAGTGCAAG
Seq C2 exon
GCATTCCTACCTTTGTGCTGCTAAATACCACAGGGATCCTTCTTCCAGCCAGAGTAGACCATCTTGAGCTTCTGAGTATTTCAGGGGAACCTCTTAAGACCTTGCCTGTGAAATACTATCCTGACAGAAAGCCATATGGACTATGGAACATTTCTGACTTCATTCCACCAGATGAAGCTTTTTTTCTTAAAATAATGGGCTACGACAAGGATGGTTATATTTTCCAGAGAGTGTCAAGTGTTTCATTTTCTAGTATTACTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'10-14,'10-13,12-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCAAAGATCCAGACCCTG
R:
ACCATCCTTGTCGTAGCCCAT
Band lengths:
253-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]