RnoEX0042116 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:68177516-68186295:-
Coord C1 exon
chr13:68186189-68186295
Coord A exon
chr13:68178674-68178794
Coord C2 exon
chr13:68177516-68177779
Length
121 bp
Sequences
Splice sites
3' ss Seq
CTCGTCCTTATCCATTTCAGACC
3' ss Score
9.25
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGAAGCTGATAAAAAAGGGGTTTGGCTTGAATGAGCTGTTAAATATCCATAACTCTGCCAAGGTGGTGAACGTCAAAGAGCCCGAAGCTGGAATGTGGACAGTGAAG
Seq A exon
ACCTCCAGCAGTGGAAGGCATTCTGTTCGCCTCACCGGTCTCAGCACTATCGATTTCCGAGCTGGCTTTTCTCGAAAGCCCACGCTGGACTTCAAAAAAACAATGAGCAGACCCGTGCAAG
Seq C2 exon
GGATACCTACGTATGTGCTACTGAACACCTCTGGAATCTCTAGTCCAGCTAGAGTAGATCGCCTCGAACTTCTGAGTATCTCAGGGGGATCTCTTAAGACCATTCCCGTCAAACATTACCCAGATCGGAAACCTTACGGCATCTGGAATATCTCTGACTTCATTCCACCAGATGAAGCTTTCTTTCTCAAGGTGACAGGCTATGACAAAGAGGATTATCTCTTCCAGAGAGTGTCAAGCGTTTCCTTTTCCAGCATTGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'8-8,'8-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACGTCAAAGAGCCCGAAG
R:
AGCCTGTCACCTTGAGAAAGA
Band lengths:
242-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]