BtaEX6070478 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015235 | HMCN1
Description
Bos taurus hemicentin 1 (HMCN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192537]
Coordinates
chr16:68395685-68407564:+
Coord C1 exon
chr16:68395685-68395791
Coord A exon
chr16:68406112-68406232
Coord C2 exon
chr16:68407301-68407564
Length
121 bp
Sequences
Splice sites
3' ss Seq
TGTCATTAAACATTTTTCAGACA
3' ss Score
6.43
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GAAAGCTGATAAAAAAGGGATTTGGCCTGAATGAGCTATTAAATATTCATAACTCTGCCAAGGTGGTGAATGTTAAAGAGCCAGAGGCTGGAATATGGACAGTGAAG
Seq A exon
ACATCTAGCACTGGAAGGCACTCTGTTCGCATCACTGGCCTCAGTACTATTGATTTTCGAGCTGGTTTTTCCCGAAAGCCCACCCTGGACTTCAAAAAAACAGTCAGCAGACCGGTGCAAG
Seq C2 exon
GAATACCTACCTATGTGCTGCTGAATACTTCTGGAATTTCCATCCCAGCTAAAGTAGATCGTCTTGAACTTCTGAGTATCTCAGGCAGTTCTCTTAAGACTATTCCTGTTAAATATTATCCTGATAGAAAACCCTATGGCATATGGAATATTTCGGATTTTATACCACCAAATGAAGCTTTCTTTCTCAAAGTAACAGGCTATGATAAGGATGGTTTTCTCTTCCAGAGAGTGTCAAGTGTTTCTTTCTCTAGTATTGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015235-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCCAAGGTGGTGAATGT
R:
AGAAAGAAAGCTTCATTTGGTGGT
Band lengths:
242-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]