HsaEX6035572 @ hg19
Exon Skipping
Gene
ENSG00000143341 | HMCN1
Description
hemicentin 1 [Source:HGNC Symbol;Acc:19194]
Coordinates
chr1:185880806-185892785:+
Coord C1 exon
chr1:185880806-185880912
Coord A exon
chr1:185891511-185891631
Coord C2 exon
chr1:185892522-185892785
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTGTCATTAAACATTTTCAGACC
3' ss Score
6.08
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GGAAGCTGATAAAAAAGGGATTTGGCCTGCATGAGCTATTAAATATCCATAACTCTGCCAAAGTAGTGAATGTGAAAGAGCCAGAGGCTGGAATGTGGACAGTGAAG
Seq A exon
ACCTCAAGCAGTGGAAGGCACTCTGTTCGCATTACTGGCCTCAGTACTATTGATTTCCGAGCTGGCTTTTCTCGAAAGCCCACCCTGGACTTCAAAAAAACAGTCAGCAGACCAGTGCAAG
Seq C2 exon
GAATACCTACCTATGTACTGCTCAATACTTCTGGAATTTCCACTCCAGCTAGAATAGATCTTCTTGAACTTTTGAGTATCTCAGGAAGTTCTCTTAAGACTATTCCTGTTAAATATTACCCACATCGAAAACCTTATGGCATATGGAATATTTCTGACTTTGTACCACCAAATGAAGCTTTCTTTCTCAAAGTAACAGGCTATGATAAAGATGATTACCTCTTCCAGAGAGTATCAAGTGTTTCCTTTTCTAGTATTGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143341-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGGATTTGGCCTGCATGA
R:
TTCCATATGCCATAAGGTTTTCGA
Band lengths:
242-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)