GgaEX0007063 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:243168-244372:+
Coord C1 exon
chr8_random:243168-243288
Coord A exon
chr8_random:243788-244051
Coord C2 exon
chr8_random:244228-244372
Length
264 bp
Sequences
Splice sites
3' ss Seq
GCGTATTTCTGTTTTTCTAGGCA
3' ss Score
8.86
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ACATCGAGCAGCGGAAGGCACTCTGTTCGGATCACGGGTCTCAGCACTATTGAATTTCGAGCTGGGTTTTCCAAGAAGTCAACGTTAGACTTCAAGAAAACATCCAGCAGACCAGTGCAAG
Seq A exon
GCATTCCTACCTTTGTGCTGCTAAATACCACAGGGATCCTTCTTCCAGCCAGAGTAGACCATCTTGAGCTTCTGAGTATTTCAGGGGAACCTCTTAAGACCTTGCCTGTGAAATACTATCCTGACAGAAAGCCATATGGACTATGGAACATTTCTGACTTCATTCCACCAGATGAAGCTTTTTTTCTTAAAATAATGGGCTACGACAAGGATGGTTATATTTTCCAGAGAGTGTCAAGTGTTTCATTTTCTAGTATTACTCCTG
Seq C2 exon
ATGCTCCAAAAGTTACAATGCCCAACAAGACTCCAGGATATTACTCACAGCCAGGGTCTGTTCCTTGCCATGTAGAAAGTCTTATACCTTTTACTCAACATTTTACTAAAAATGGAGTAAAACTAGGAGTGGATCAGTTATTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'12-15,'12-14,13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.102
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0767911=I-set=PU(40.3=55.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCGAGCAGCGGAAGG
R:
AACTGATCCACTCCTAGTTTTACTCC
Band lengths:
260-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]