DreEX6046220 @ danRer10
Exon Skipping
Gene
ENSDARG00000016936 | hmcn1
Description
hemicentin 1 [Source:ZFIN;Acc:ZDB-GENE-041014-322]
Coordinates
chr20:34352809-34357424:-
Coord C1 exon
chr20:34357304-34357424
Coord A exon
chr20:34353065-34353328
Coord C2 exon
chr20:34352809-34352953
Length
264 bp
Sequences
Splice sites
3' ss Seq
CTGTGCTCTTTCACACACAGGAA
3' ss Score
10.1
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
Exon sequences
Seq C1 exon
ACGTCCAGTGAGGGCAGACATTCGGTCCGCATATCAGGGCTCAGCACCATCGATTTCCGAGCTGGCTTTTCTCGAAGACAAACGTTGGACTTTAAAATGACATCCAGCCGGCCAGTACAAG
Seq A exon
GAATCCCCACCTTCATCCTTCTGAACACCACTGGTCTTTCTCCTCCCGCTCGCACCGACCGCCTGGAACTCTTGAGCATCACTGGTAGAGTAATGAAGACGCTGCCCATCCGCTACTTCCCCGAACGACACCCTTATGGCATTTGGAACATCACCGAGTTTGTTCCACCCAAAGAGGCGTTCTTCCTGCGGGTAACCGGCTATGATCGCGATGGCTTCCTCTTTCAGAGAGTGTCAAGTGTCTCCTATTCCAGCATTGTGCCAG
Seq C2 exon
ATGCACCCAAAGTAAGCATGCCAAGTCGTACCCCGGGCTACTACCTGCAGAAGGGGGGTATTACATGTTTTGTGGAAAGCCTGATTCCCTTTACCTTGCGGTTCACCAGGGAGGGTCTGCGTCTGGGTGTGGATCAGCTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016936-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGTGAGGGCAGACATTC
R:
TGAAGAGCTGATCCACACCCA
Band lengths:
263-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]