RnoEX6044593 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:68175677-68178794:-
Coord C1 exon
chr13:68178674-68178794
Coord A exon
chr13:68177516-68177779
Coord C2 exon
chr13:68175677-68175821
Length
264 bp
Sequences
Splice sites
3' ss Seq
ACGATGCCTTTCTCTTGTAGGGA
3' ss Score
10.39
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ACCTCCAGCAGTGGAAGGCATTCTGTTCGCCTCACCGGTCTCAGCACTATCGATTTCCGAGCTGGCTTTTCTCGAAAGCCCACGCTGGACTTCAAAAAAACAATGAGCAGACCCGTGCAAG
Seq A exon
GGATACCTACGTATGTGCTACTGAACACCTCTGGAATCTCTAGTCCAGCTAGAGTAGATCGCCTCGAACTTCTGAGTATCTCAGGGGGATCTCTTAAGACCATTCCCGTCAAACATTACCCAGATCGGAAACCTTACGGCATCTGGAATATCTCTGACTTCATTCCACCAGATGAAGCTTTCTTTCTCAAGGTGACAGGCTATGACAAAGAGGATTATCTCTTCCAGAGAGTGTCAAGCGTTTCCTTTTCCAGCATTGTCCCAG
Seq C2 exon
ATGCTCCCAAAGTTACAATGCCCACGAGGACCTCAGGATACTACCTACAGCCAGGCCGAATCCTCTGCTCGGTTGAGAGTCTTTTGCCCTTTACTTTGAGCTTCGTGAGAAATGGAATTGCCCTGGGAGTAGAGCAATATTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGTGGAAGGCATTCTGT
R:
TTAAATATTGCTCTACTCCCAGGGC
Band lengths:
260-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]