BtaEX6070477 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015235 | HMCN1
Description
Bos taurus hemicentin 1 (HMCN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192537]
Coordinates
chr16:68406112-68409209:+
Coord C1 exon
chr16:68406112-68406232
Coord A exon
chr16:68407301-68407564
Coord C2 exon
chr16:68409065-68409209
Length
264 bp
Sequences
Splice sites
3' ss Seq
ATAAATTCTTTCTCTTGTAGGAA
3' ss Score
10.32
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ACATCTAGCACTGGAAGGCACTCTGTTCGCATCACTGGCCTCAGTACTATTGATTTTCGAGCTGGTTTTTCCCGAAAGCCCACCCTGGACTTCAAAAAAACAGTCAGCAGACCGGTGCAAG
Seq A exon
GAATACCTACCTATGTGCTGCTGAATACTTCTGGAATTTCCATCCCAGCTAAAGTAGATCGTCTTGAACTTCTGAGTATCTCAGGCAGTTCTCTTAAGACTATTCCTGTTAAATATTATCCTGATAGAAAACCCTATGGCATATGGAATATTTCGGATTTTATACCACCAAATGAAGCTTTCTTTCTCAAAGTAACAGGCTATGATAAGGATGGTTTTCTCTTCCAGAGAGTGTCAAGTGTTTCTTTCTCTAGTATTGTGCCAG
Seq C2 exon
ATGCTCCGAAAGTTACAATGCCTGAGAAAACCCCGGGCTACTACCTGCAGCCGGGCCAGATTCCCTGCGCTGTTGACAGTCTTCTGCCTTTTACCTTGAGTTTTGTCAGAAATGGAGCTACACTTGGAGTCGACCAGTATTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015235-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTAGCACTGGAAGGCAC
R:
ATACTGGTCGACTCCAAGTGT
Band lengths:
261-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]