MmuEX6028053 @ mm9
Exon Skipping
Gene
ENSMUSG00000066842 | Hmcn1
Description
hemicentin 1 [Source:MGI Symbol;Acc:MGI:2685047]
Coordinates
chr1:152653498-152656937:-
Coord C1 exon
chr1:152656817-152656937
Coord A exon
chr1:152655663-152655926
Coord C2 exon
chr1:152653498-152653642
Length
264 bp
Sequences
Splice sites
3' ss Seq
ACAATGCCTTTCTCTTGTAGGAA
3' ss Score
10.87
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ACCTCCAGCAGTGGAAGGCATTCTGTTCGTATCACCGGTCTCAGCACTATTGATTTCCGAGCTGGCTTTTCTCGAAAGCCCACGCTGGACTTCAAAAAAACAATGAGCAGACCCGTGCAAG
Seq A exon
GAATACCTACGTATGTGCTACTGAACACTTCTGGAATCTCCAGTCCAGCTAGAGTAGACCGTCTCGAACTTCTGAGTATCTCAGGGGGATCTCTTAAGACCATTCCTGTTAAGCATTACCCAGATCGGAAGCCTTACGGCATCTGGAATATTTCTGACTTCATTCCCCCAGATGAAGCTTTCTTTCTCAAGGTGACAGGCTATGACAAAGATGGTTATCTCTTCCAGAGAGTGTCAAGTGTTTCTTTTTCCAGCATTGTCCCAG
Seq C2 exon
ATGCTCCCAAAGTTACAATGCCCACAAGAACGCTGGGATACTACCTGCAGCCAGGCCAAATCCTCTGTTCGGTTGAGAGTTTTTTGCCCTTTACTTTGAGTTTCATGAGAGATGGAATTGCCCTGGGAGTAGACCAATATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066842-'9-7,'9-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGTGGAAGGCATTCTGT
R:
TTAAATATTGGTCTACTCCCAGGGC
Band lengths:
260-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: