GgaEX0007716 @ galGal3
Exon Skipping
Gene
ENSGALG00000005533 | ZMYM3
Description
NA
Coordinates
chr4:2288687-2293265:+
Coord C1 exon
chr4:2288687-2288859
Coord A exon
chr4:2289283-2289448
Coord C2 exon
chr4:2293180-2293265
Length
166 bp
Sequences
Splice sites
3' ss Seq
CCTGCTGATGCGGGCTTTAGGCA
3' ss Score
4.15
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GGTGTGTGCTTCTTTACAAACAGGATTTCACCAAGAACCTGGGCCTGTGCTGCATCACCTGCACCTACTGTTCTCAGACCTGCCAGCGGGCGGTCACCGAGCAGCTGGAGGGCAGCACCTGGGACTTCTGTAGTGAAGACTGCAAAAGCAAATACTTGCTCTGGTACTTCAAG
Seq A exon
GCAGCTCGGTGCCATGCCTGCAAGCGTCAGGGGAAGCTGCTGGAAACCATCCACTGGCGAGGGCAAATCAAACACTTCTGCAACCAGCAGTGTCTGCTGCGATTTTACAATCAACAGAACCAGCCCAACCTGGACACGCAGAAGGGGCCCGAGAGCCTGCTGAACA
Seq C2 exon
GTCAATCTTCAGAAACAAAACCACCCGCTCCTTCCCATCAGAAGGCAGAGACTAACACGGTAAGGTCTGCTGGAGATAGGAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533-'16-17,'16-15,17-17
Average complexity
C2
Mappability confidence:
89%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.232 C2=1.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(12.8=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
A:
PF064679=zf-FCS=PD(85.0=60.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTGTGCTTCTTTACAAACAGG
R:
TCCAGCAGACCTTACCGTGTT
Band lengths:
247-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]