DreEX0087947 @ danRer10
Exon Skipping
Gene
ENSDARG00000027353 | zmym2
Description
zinc finger, MYM-type 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2408]
Coordinates
chr9:21629332-21632556:-
Coord C1 exon
chr9:21632384-21632556
Coord A exon
chr9:21629462-21629627
Coord C2 exon
chr9:21629332-21629363
Length
166 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCCTGTGGCCACTAGGCG
3' ss Score
6.71
5' ss Seq
TAGGTAGGG
5' ss Score
6.53
Exon sequences
Seq C1 exon
GCTGTAAGTTACTGTTCAAGCAGGATTTCATCAGGCGTCTGGGTCTGAAGTGTGTGACTTGCAACCACTGTACACAGATGTGCAAGAAATCTGTCACTAAACAGATAGACGGAGTCAGCCGGGACTTCTGCAGCGAGACCTGTGCTAAGAAGTTTCACGACTGGTACTACAAG
Seq A exon
GCGGCGCGCTGTGACTGCTGTAAGGTACAGGGGAACCTGACGGAGTCTGTACAGTGGCGTGCAGAGTTAAAGCAGTTCTGTGACCAGCAGTGTCTCCTGCGCTTCTACTGCCAACAGAACGAGCCCAACATGGCTACACAGAAAGGCCCAGAAAACACTGCTTTAG
Seq C2 exon
GGTTTGGAGGACCAACCCAAACATCCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027353-'19-13,'19-12,20-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.161 C2=0.455
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(12.5=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
A:
PF064679=zf-FCS=PD(85.0=60.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTAAGTTACTGTTCAAGCAGG
R:
TTTGGATGTTTGGGTTGGTCCT
Band lengths:
202-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]