MmuEX6041795 @ mm9
Exon Skipping
Gene
ENSMUSG00000021945 | Zmym2
Description
zinc finger, MYM-type 2 [Source:MGI Symbol;Acc:MGI:1923257]
Coordinates
chr14:57550926-57557276:+
Coord C1 exon
chr14:57550926-57551098
Coord A exon
chr14:57556347-57556512
Coord C2 exon
chr14:57557242-57557276
Length
166 bp
Sequences
Splice sites
3' ss Seq
ACTTTTTTCTTTTAATTAAGGCT
3' ss Score
6.29
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GCTGCAAGCTATTATACAAACAAGATTTTGCAAGACGATTAGGATTAAGATGTGTTACCTGCAACTATTGTTCTCAGCTGTGTAAGAAGGGAGCCACTAAAGAACTTGATGGAGTTGTCAGAGACTTCTGCAGTGAAGACTGCTGTAAGAAATTCCAGGAGTGGTACTACAAG
Seq A exon
GCTGCGAGGTGTGACTGCTGTAAATCCCAAGGCACTCTGAAAGAGCGAGTGCAGTGGCGTGGCGAAATGAAACATTTCTGTGATCAGCACTGCTTACTACGTTTCTATTGTCAGCAAAATGAGCCCAACATGACAACTCAGAAAGGACCTGAAAACCTACATTATG
Seq C2 exon
ATCAGGGCTGTCAGACGTCCCGAACCAAAATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021945-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.333
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(12.5=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
A:
PF064679=zf-FCS=PD(85.0=60.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAAGCTATTATACAAACAAGA
R:
GGGACGTCTGACAGCCCT
Band lengths:
194-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: