GgaEX6006361 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr1:178291992-178299319:-
Coord C1 exon
chr1:178299147-178299319
Coord A exon
chr1:178292917-178293082
Coord C2 exon
chr1:178291992-178292026
Length
166 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTGCATTAAGGCT
3' ss Score
6.69
5' ss Seq
ACGGTACGT
5' ss Score
11.34
Exon sequences
Seq C1 exon
GCTGCAAGCTGCTATATAAACAAGACTTTGCAAGACGGTTAGGACTGAGATGTGTTACTTGTAATTACTGCTCACAGCTGTGCAAAAAGGGAGCAACTAAGGAACTTGATGGTGTAGTGAGAGATTTCTGCAGTGAAGAGTGCTGTAAAAAATTTCAGGACTGGTACTACAAG
Seq A exon
GCTGCGCGGTGTGACTGTTGTAAGTCACAGGGAACTCTCAGAGAGAAAGTGCAGTGGCGTGGAGAAATGAAACACTTTTGTGATCAGCACTGTTTGCTCCGTTTCTACTGTCAACAAAATGAACCAAATCTGGCAACCCAAAAAGGACCGGAGAACTTGCAATACG
Seq C2 exon
ATCAGGGCTGTCAAACTCCCCGAACAAAAATAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139-'39-38,'39-37,41-38=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.296
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(12.5=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
A:
PF064679=zf-FCS=PD(85.0=60.7)
C2:
NO
Main Skipping Isoform:
ENSGALT00000043420fB4313
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAAGCTGCTATATAAACA
R:
TTTTGTTCGGGGAGTTTGACAG
Band lengths:
202-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]