BtaEX6056653 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36404667-36412197:-
Coord C1 exon
chr12:36412025-36412197
Coord A exon
chr12:36405803-36405968
Coord C2 exon
chr12:36404667-36404701
Length
166 bp
Sequences
Splice sites
3' ss Seq
CCCTTCCTTGCTTCATTAAGGCT
3' ss Score
5.62
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
Exon sequences
Seq C1 exon
GCTGCAAACTGTTGTACAAACAGGACTTTGCAAGGCGTTTAGGACTGAGGTGCGTGACTTGCAATTACTGCTCTCAGCTGTGTAAGAAGGGGGCAACAAGGGAGCTGGATGGTGTGGTGAGGGACTTCTGCAGCGAGGAGTGCTGCCGCCGCTTCCAGGACTGGTACTACAAG
Seq A exon
GCTGCCAGGTGTGACTGCTGTAAGTCTCAAGGAGCCCTTCGGGAGAGGGTGCAGTGGCGTGGCGAGATGAAGCATTTCTGTGACCAGCACTGCCTGTTACGCTTCTACTGCCAGCAGAGCGAGCCCAACATGACGACCCAGAGGGGACCTGAGAACTTACACTACG
Seq C2 exon
ATCAGGGTTGTCAGACGTCCCGAACCAAAATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403-'28-26,'28-25,30-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.222
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(12.5=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
A:
PF064679=zf-FCS=PD(85.0=60.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAAACTGTTGTACAAACA
R:
GGGACGTCTGACAACCCTGAT
Band lengths:
194-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]