HsaEX6039450 @ hg19
Exon Skipping
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger, MYM-type 2 [Source:HGNC Symbol;Acc:12989]
Coordinates
chr13:20610877-20626451:+
Coord C1 exon
chr13:20610877-20611049
Coord A exon
chr13:20625573-20625738
Coord C2 exon
chr13:20626417-20626451
Length
166 bp
Sequences
Splice sites
3' ss Seq
ACCTTCCTTTTTAAATTAAGGCT
3' ss Score
5.8
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GCTGCAAATTATTATACAAACAGGATTTTGCCAGACGTTTAGGATTGAGATGTGTTACTTGCAACTATTGTTCTCAGCTATGTAAGAAGGGAGCAACTAAAGAACTCGATGGTGTTGTGAGAGATTTCTGCAGTGAAGATTGCTGTAAAAAATTTCAGGATTGGTACTACAAG
Seq A exon
GCTGCAAGGTGTGACTGTTGTAAATCTCAAGGAACTCTTAAAGAGCGAGTTCAGTGGCGTGGGGAAATGAAACATTTCTGTGATCAACATTGCTTACTGCGTTTCTACTGTCAACAAAATGAGCCCAACATGACAACTCAGAAAGGACCTGAAAACTTACATTATG
Seq C2 exon
ATCAGGGTTGTCAGACATCTCGAACCAAAATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741-'23-24,'23-21,25-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.333
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(12.5=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
A:
PF064679=zf-FCS=PD(85.0=60.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAAACAGGATTTTGCCAGACGT
R:
TGTCATTTTGGTTCGAGATGTCTGA
Band lengths:
194-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)