MmuEX6045438 @ mm10
Exon Skipping
Gene
ENSMUSG00000031310 | Zmym3
Description
zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
Coordinates
chrX:101412378-101413661:-
Coord C1 exon
chrX:101413489-101413661
Coord A exon
chrX:101413112-101413277
Coord C2 exon
chrX:101412378-101412475
Length
166 bp
Sequences
Splice sites
3' ss Seq
CATTCTGTCAATGCCCTCAGGCT
3' ss Score
7.52
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GCTGTGTACTGCTGTACAAGCAAGATTTTACTAAGAAGCTGGGCTTATGTTGTATCACCTGTACTTACTGTTCCCAAACCTGCCAGCGTGGTGTCACTGAGCAGCTGGATGGCAGCACCTGGGACTTCTGCAGCGAGGACTGTAAGACCAAGTACCTGTTATGGTACTGCAAG
Seq A exon
GCTGCCCGGTGCCATGCCTGTAAGCGCCAGGGGAAGCTGCTGGAAACGATCCACTGGCGTGGGCAAATCCGTCATTTCTGCAACCAACAGTGTCTGCTGCGTTTCTACAGCCAGCAGAACCAACCCAACTTGGATACCCAGAGTGGGCCAGAAAGCCTCCTGAACA
Seq C2 exon
GTCAGTCTTCTGAGTCCAAGCCCCAGACACCCTCTCAAACCAAAGTGGAGAACAACCACACAGTGAGGACCCCAGACGAGAATGGGAATTTGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031310-'34-37,'34-35,36-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.268 C2=1.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(12.8=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
A:
PF064679=zf-FCS=PD(85.0=60.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGATTTTACTAAGAAGCTGGGC
R:
TGCCCAAATTCCCATTCTCGT
Band lengths:
250-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types