GgaEX0008876 @ galGal3
Exon Skipping
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6934390-6935426:-
Coord C1 exon
chr7:6935303-6935426
Coord A exon
chr7:6934895-6935004
Coord C2 exon
chr7:6934390-6934492
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTTTAATTTGAAGGTT
3' ss Score
9.51
5' ss Seq
GAGGTGATC
5' ss Score
3.49
Exon sequences
Seq C1 exon
GATGCTGGCAGCCAACAAATTGGCTTTCTTTTGGGCAGCTGTGGAGTAACGCTAGCTTTAACCACTGATGCTTGTCAGAAAGGCCTTCCTAAAGCTCAAACGGGTGAGGTGGTTACCTTCAAAG
Seq A exon
GTTGGCCTCGTCTCATTTGGTTTGTGATTGATGGGAAGCATCTGGCAAAACCAACTAAGGATTGGCATCCACAATTACGGGATGCCAGTGCTGAGATTGCTTATATTGAG
Seq C2 exon
TACAAAACAAGTAAGGAAGGCAGCACGGTGGGCATTAGTGTATCTCATGCTTCCATGCTGGCACACTGTCACGCATTGACTCAGGCATGTGGGTATTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228-'20-24,'20-23,22-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(10.4=100)
A:
PF0050123=AMP-binding=FE(7.5=100)
C2:
PF0050123=AMP-binding=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGGCAGCCAACAAATTG
R:
CTTCTGAATACCCACATGCCTGA
Band lengths:
226-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]