HsaEX6006745 @ hg38
Exon Skipping
Gene
ENSG00000160305 | DIP2A
Description
disco interacting protein 2 homolog A [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr21:46533524-46534687:+
Coord C1 exon
chr21:46533524-46533647
Coord A exon
chr21:46534004-46534113
Coord C2 exon
chr21:46534585-46534687
Length
110 bp
Sequences
Splice sites
3' ss Seq
GTCCTGTCTGTGTGTCACAGGTT
3' ss Score
9.71
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GATGCAGGCAGCCAGCAGGTTGGGTTTCTGCTGGGCAGCTGTGGAGTCTTCTTGGCCCTGACCACAGACGCTTGTCAGAAAGGCCTCCCCAAGGCACAGACAGGAGAGGTGGCAGCTTTCAAAG
Seq A exon
GTTGGCCCCCGCTCTCCTGGCTAGTGATTGATGGGAAGCATCTAGCCAAGCCCCCAAAGGACTGGCACCCTCTGGCCCAGGACACAGGGACTGGGACTGCCTACATTGAG
Seq C2 exon
TATAAAACCAGCAAAGAAGGCAGTACGGTGGGGGTCACAGTGTCCCACGCATCCCTGCTGGCACAGTGCCGGGCTCTGACCCAGGCGTGCGGGTACTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305-'29-33,'29-32,30-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.108 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
PF0050123=AMP-binding=FE(7.5=100)
C2:
PF0050123=AMP-binding=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCAGCAGGTTGGGTTTC
R:
CTTCTGAGTACCCGCACGC
Band lengths:
219-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains