DreEX0026986 @ danRer10
Exon Skipping
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:609623-611413:-
Coord C1 exon
chr9:611290-611413
Coord A exon
chr9:609820-609929
Coord C2 exon
chr9:609623-609725
Length
110 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTTGTCAGGCT
3' ss Score
6.89
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
GATGCGGGCGGGCAGCAGGTGGGCTTTCTGCTGGGCAGCTGTGGGGTCACTCTGGCTCTGACCACTGACGCCTGCCAGAAGGGTTTGCCCAAAGCACAGACTGGGGAGGTGGTCACTTTTAAAG
Seq A exon
GCTGGCCTCGGCTGCTGTGGTTTGTTACTGATGGAAAACATGTTGTAAAGCCTCCTAAAGACTGGCATCCACCAATACGAGACGCCAGCAACGAGATCGCATACATAGAG
Seq C2 exon
TATAAGACCGGTAAGGAGGGCAGCACTATGGGGGTCACGGTGTCTCACTCCGCCATGTTGGCTCACTGTCATGCGCTCACACAGGCCTGCGGATACACAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058-'15-15,'15-14,16-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.081 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
PF0050123=AMP-binding=FE(7.6=100)
C2:
PF0050123=AMP-binding=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCAGGTGGGCTTTC
R:
AGGCCTGTGTGAGCGCAT
Band lengths:
202-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]