MmuEX6057110 @ mm10
Exon Skipping
Gene
ENSMUSG00000048264 | Dip2c
Description
disco interacting protein 2 homolog C [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9567831-9568693:+
Coord C1 exon
chr13:9567831-9567954
Coord A exon
chr13:9568301-9568410
Coord C2 exon
chr13:9568591-9568693
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATTTATGACTTATTTCCTAGGTT
3' ss Score
7.99
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GATGCAGGGAGCCAACAGATAGGTTTCTTGCTTGGAAGCTGTGGAGTAACTGTTGCCTTGACTAGTGATGCCTGTCACAAAGGACTGCCAAAAAGCCCAACAGGAGAGATCCCACAGTTCAAAG
Seq A exon
GTTGGCCAAAGCTGCTATGGTTTGTCACAGAATCAAAACACCTCTCTAAACCTCCTCGGGATTGGTTTCCACACATCAAAGATGCAAATAATGACACAGCTTATATTGAG
Seq C2 exon
TATAAGACGTGTAAAGATGGAAGTGTTCTTGGTGTGACCGTGACGAGGATAGCGCTGCTGACACACTGTCAGGCACTCACACAGGCCTGCGGCTATACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264-'22-21,'22-17,24-21=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(23.0=100)
A:
PF0050123=AMP-binding=FE(20.2=100)
C2:
PF0050123=AMP-binding=FE(13.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCAGGGAGCCAACAGATA
R:
GCCTGTGTGAGTGCCTGAC
Band lengths:
210-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types