GgaEX6018470 @ galGal3
Exon Skipping
Gene
ENSGALG00000006652 | DIP2C
Description
NA
Coordinates
chr2:9933872-9936196:-
Coord C1 exon
chr2:9936073-9936196
Coord A exon
chr2:9935298-9935407
Coord C2 exon
chr2:9933872-9933974
Length
110 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTGACTATGTCTCAGGCT
3' ss Score
5.12
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GATGCAGGAAGTCAACAGATAGGCTTTTTGCTTGGAAGCTGTGGAGTCACTGTGGCCTTGACAAGTGACGCATGCCATAAAGGACTGCCTAAAAGCCCCACAGGGGAGATACCACAGTTTAAAG
Seq A exon
GCTGGCCAAAGCTGCTGTGGTTTGTCACAGAGTCTAAACATCTCTCCAAGCCTCCTCGTGACTGGTTCCCACATATCAAGGATGCAAACAATGACACAGCTTACATCGAG
Seq C2 exon
TACAAAACATGTAAAGATGGAAGTGTGCTCGGTGTGACTGTAACGAGGATTGCGCTGCTGACGCACTGCCAAGCCCTGACCCAGGCATGTGGATACACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006652-'10-13,'10-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
PF0050123=AMP-binding=FE(7.5=100)
C2:
PF0050123=AMP-binding=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGAAGTCAACAGATAGGC
R:
TGTATCCACATGCCTGGGTCA
Band lengths:
219-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]