BtaEX6064941 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006531 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr13:47106433-47107150:+
Coord C1 exon
chr13:47106433-47106556
Coord A exon
chr13:47106815-47106924
Coord C2 exon
chr13:47107048-47107150
Length
110 bp
Sequences
Splice sites
3' ss Seq
ACTTGTTCTTTATTTCCAAGGTT
3' ss Score
8.65
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GATGCAGGAAGCCAGCAGATTGGGTTCTTGCTTGGAAGCTGTGGGGTGACTGTAGCCTTGACGAGCGATGCTTGCCACAAGGGGCTGCCAAAGAGCCCGACGGGGGAGATCCCGCAGTTCAAAG
Seq A exon
GTTGGCCAAAACTATTATGGTTTGTCACAGAGTCAAAACATCTCTCTAAACCTCCTCGAGATTGGTTCCCGCACATTAAAGATGCAAATAATGACACTGCGTATATTGAG
Seq C2 exon
TACAAGACGTGCAAGGATGGAAGTGTGCTCGGGGTGACCGTGACGAGGATCGCGCTTCTGACCCACTGCCAGGCCCTCACACAGGCGTGTGGCTACACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006531-'14-17,'14-16,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
PF0050123=AMP-binding=FE(7.5=100)
C2:
PF0050123=AMP-binding=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAAGCCAGCAGATTGGG
R:
GTGTAGCCACACGCCTGT
Band lengths:
218-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]