HsaEX6087266 @ hg38
Exon Skipping
Gene
ENSG00000151240 | DIP2C
Description
disco interacting protein 2 homolog C [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr10:389991-390863:-
Coord C1 exon
chr10:390740-390863
Coord A exon
chr10:390264-390373
Coord C2 exon
chr10:389991-390093
Length
110 bp
Sequences
Splice sites
3' ss Seq
ACTTGTTGTTTATTTCCAAGGTT
3' ss Score
7.19
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GACGCAGGGAGCCAGCAGATAGGTTTCTTGCTTGGAAGCTGTGGAGTTACTGTAGCCTTGACTAGTGACGCCTGCCATAAAGGACTTCCAAAAAGCCCAACGGGAGAGATCCCACAGTTTAAAG
Seq A exon
GTTGGCCAAAGCTGCTGTGGTTTGTCACAGAGTCTAAACATCTCTCCAAACCGCCCCGAGACTGGTTCCCACACATTAAAGATGCCAATAACGACACTGCGTATATTGAG
Seq C2 exon
TACAAGACGTGTAAGGATGGCAGTGTGCTGGGTGTGACGGTGACGAGGACTGCGCTGCTGACACACTGCCAGGCCCTGACGCAGGCGTGTGGCTACACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240-'56-52,'56-51,57-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(23.0=100)
A:
PF0050123=AMP-binding=FE(20.2=100)
C2:
PF0050123=AMP-binding=PU(3.4=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGAGCCAGCAGATAGGTT
R:
GTGTAGCCACACGCCTGC
Band lengths:
218-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains