DreEX0027042 @ danRer10
Exon Skipping
Gene
ENSDARG00000062154 | dip2ca
Description
DIP2 disco-interacting protein 2 homolog Ca (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-031118-39]
Coordinates
chr24:27078762-27089613:+
Coord C1 exon
chr24:27078762-27078872
Coord A exon
chr24:27085702-27085811
Coord C2 exon
chr24:27089511-27089613
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGGCTCCACCTACTCATTAGGAT
3' ss Score
4.45
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTGGCTCTCGTGTTCCCCAACAACGATCCTGCCGCATTTATGGTCGCATTTTACGGCTGCCTGCTGGCGGAGGTGGTGCCCGTACCCATCGAAGTGCCACTTACTCGAAAG
Seq A exon
GATGGCCAAAGCTGCTCTGGTTCGTCACAGAATCCAAACACCTGTCCAAGCCGCCTCGTGATTGGTTCCCTCACATCAAAGATGCAAATAACGACACCGCCTACATAGAG
Seq C2 exon
TATAAAACCTGTAAAGATGGGAGTGTTTTGGGTGTGACGGTGACACGGATCGCACTTCTTACACACTGCCAGGCCCTAACACAATCTTGTGGATACACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062154_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.5=100)
A:
PF0050123=AMP-binding=FE(7.5=100)
C2:
PF0050123=AMP-binding=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCGTGTTCCCCAACAACG
R:
AAGATTGTGTTAGGGCCTGGC
Band lengths:
195-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]