GgaEX6018470 @ galGal4
Exon Skipping
Gene
ENSGALG00000006652 | DIP2C
Description
disco-interacting protein 2 homolog C [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr2:9973772-9976096:-
Coord C1 exon
chr2:9975973-9976096
Coord A exon
chr2:9975198-9975307
Coord C2 exon
chr2:9973772-9973874
Length
110 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTGACTATGTCTCAGGCT
3' ss Score
5.12
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GATGCAGGAAGTCAACAGATAGGCTTTTTGCTTGGAAGCTGTGGAGTCACTGTGGCCTTGACAAGTGACGCATGCCATAAAGGACTGCCTAAAAGCCCCACAGGGGAGATACCACAGTTTAAAG
Seq A exon
GCTGGCCAAAGCTGCTGTGGTTTGTCACAGAGTCTAAACATCTCTCCAAGCCTCCTCGTGACTGGTTCCCACATATCAAGGATGCAAACAATGACACAGCTTACATCGAG
Seq C2 exon
TACAAAACATGTAAAGATGGAAGTGTGCTCGGTGTGACTGTAACGAGGATTGCGCTGCTGACGCACTGCCAAGCCCTGACCCAGGCATGTGGATACACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006652-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(13.0=100)
A:
PF0050123=AMP-binding=FE(11.4=100)
C2:
PF0050123=AMP-binding=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGAAGTCAACAGATAGGC
R:
TGTATCCACATGCCTGGGTCA
Band lengths:
219-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]