MmuEX6057110 @ mm9
Exon Skipping
Gene
ENSMUSG00000048264 | Dip2c
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9567077-9567939:+
Coord C1 exon
chr13:9567077-9567200
Coord A exon
chr13:9567547-9567656
Coord C2 exon
chr13:9567837-9567939
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATTTATGACTTATTTCCTAGGTT
3' ss Score
7.99
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GATGCAGGGAGCCAACAGATAGGTTTCTTGCTTGGAAGCTGTGGAGTAACTGTTGCCTTGACTAGTGATGCCTGTCACAAAGGACTGCCAAAAAGCCCAACAGGAGAGATCCCACAGTTCAAAG
Seq A exon
GTTGGCCAAAGCTGCTATGGTTTGTCACAGAATCAAAACACCTCTCTAAACCTCCTCGGGATTGGTTTCCACACATCAAAGATGCAAATAATGACACAGCTTATATTGAG
Seq C2 exon
TATAAGACGTGTAAAGATGGAAGTGTTCTTGGTGTGACCGTGACGAGGATAGCGCTGCTGACACACTGTCAGGCACTCACACAGGCCTGCGGCTATACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264-'11-15,'11-14,12-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(15.9=100)
A:
PF0050123=AMP-binding=FE(14.0=100)
C2:
PF0050123=AMP-binding=FE(13.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCAGGGAGCCAACAGATA
R:
GCCTGTGTGAGTGCCTGAC
Band lengths:
210-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: