HsaEX6087266 @ hg19
Exon Skipping
Gene
ENSG00000151240 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:29150]
Coordinates
chr10:435931-436803:-
Coord C1 exon
chr10:436680-436803
Coord A exon
chr10:436204-436313
Coord C2 exon
chr10:435931-436033
Length
110 bp
Sequences
Splice sites
3' ss Seq
ACTTGTTGTTTATTTCCAAGGTT
3' ss Score
7.19
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GACGCAGGGAGCCAGCAGATAGGTTTCTTGCTTGGAAGCTGTGGAGTTACTGTAGCCTTGACTAGTGACGCCTGCCATAAAGGACTTCCAAAAAGCCCAACGGGAGAGATCCCACAGTTTAAAG
Seq A exon
GTTGGCCAAAGCTGCTGTGGTTTGTCACAGAGTCTAAACATCTCTCCAAACCGCCCCGAGACTGGTTCCCACACATTAAAGATGCCAATAACGACACTGCGTATATTGAG
Seq C2 exon
TACAAGACGTGTAAGGATGGCAGTGTGCTGGGTGTGACGGTGACGAGGACTGCGCTGCTGACACACTGCCAGGCCCTGACGCAGGCGTGTGGCTACACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240-'15-18,'15-17,16-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
PF0050123=AMP-binding=FE(7.5=100)
C2:
PF0050123=AMP-binding=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGAGCCAGCAGATAGGTT
R:
GTGTAGCCACACGCCTGC
Band lengths:
218-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)