RnoEX0027965 @ rn6
Exon Skipping
Gene
ENSRNOG00000015288 | Dip2c
Description
disco-interacting protein 2 homolog C [Source:RGD Symbol;Acc:1560155]
Coordinates
chr17:63708301-63709253:+
Coord C1 exon
chr17:63708301-63708424
Coord A exon
chr17:63708749-63708858
Coord C2 exon
chr17:63709151-63709253
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATTTATGATTTATTTCCAAGGTT
3' ss Score
6.39
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GATGCAGGGAGCCAACAGATAGGTTTCTTGCTTGGAAGCTGTGGAGTAACTGTTGCCTTGACTAGTGATGCCTGTCACAAAGGACTGCCAAAAAGCCCAACAGGAGAGATCCCACAGTTCAAAG
Seq A exon
GTTGGCCAAAGCTGCTATGGTTTGTCACAGAATCAAAACACCTCTCTAAACCTCCTCGGGATTGGTTTCCACACATCAAAGATGCTAATAACGACACAGCTTATATTGAG
Seq C2 exon
TATAAGACGTGTAAAGACGGAAGTGTTCTTGGTGTGACAGTGACGAGGATAGCGCTGCTGACACACTGCCAGGCACTTACACAGGCCTGCGGCTATACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015288-'25-21,'25-20,26-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
PF0050123=AMP-binding=FE(7.5=100)
C2:
PF0050123=AMP-binding=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGGAGCCAACAGATAGG
R:
CCGCAGGCCTGTGTAAGTG
Band lengths:
214-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]