GgaEX0009387 @ galGal3
Exon Skipping
Gene
ENSGALG00000006598 | SORL1
Description
NA
Coordinates
chr24:3545742-3549119:-
Coord C1 exon
chr24:3548947-3549119
Coord A exon
chr24:3546465-3546603
Coord C2 exon
chr24:3545742-3545855
Length
139 bp
Sequences
Splice sites
3' ss Seq
TAGTAGTGTGTGCCCTTCAGAAC
3' ss Score
4.1
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
Exon sequences
Seq C1 exon
AGGAGAACGAGTTCATCCTGTACGCCACCCGCTACTCCATCCACCGCTACGACCTCGCCTCGGGGCTCAGCCAGGAGCTGCCGCTGGCCGGGCTGCGCGGGGCAGTCGCGCTCGACTTTGACTATGAGCACAACTGCCTCTACTGGGCTGACGTCACGCTGGACATCATCCAG
Seq A exon
AACGAGATCTACTGGAATGACTGGTCGCAGCTGAGCATCTTCCGGGCGTCCAAAAACAGCGGCTCAAGGATGGAGACGTTGGTTGGCCGATTAAATGGGATCATGGACATGAAAATCTTCTACAGAGGAAAGACGACAG
Seq C2 exon
AAAACACGTGTCTGCCCAACCAGTACAGATGCTTCAATGGGAACTGCATCAACAGCATTTGGCAGTGTGACAACAACAATGACTGCGGGGACATGAGCGATGAGAAGAACTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006598_MULTIEX1-4/5=C1-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PU(33.3=22.4)
A:
NO
C2:
PF0005713=Ldl_recept_a=WD(100=94.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTTCATCCTGTACGCCAC
R:
TCCCCGCAGTCATTGTTGTTG
Band lengths:
257-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]