GgaEX0009386 @ galGal3
Exon Skipping
Gene
ENSGALG00000006598 | SORL1
Description
NA
Coordinates
chr24:3547803-3549119:-
Coord C1 exon
chr24:3548947-3549119
Coord A exon
chr24:3548371-3548502
Coord C2 exon
chr24:3547803-3547894
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTATTTTTCCTCCAGCGT
3' ss Score
10.09
5' ss Seq
GAGGTACGG
5' ss Score
9.4
Exon sequences
Seq C1 exon
AGGAGAACGAGTTCATCCTGTACGCCACCCGCTACTCCATCCACCGCTACGACCTCGCCTCGGGGCTCAGCCAGGAGCTGCCGCTGGCCGGGCTGCGCGGGGCAGTCGCGCTCGACTTTGACTATGAGCACAACTGCCTCTACTGGGCTGACGTCACGCTGGACATCATCCAG
Seq A exon
CGTCTTTGTCTCAATGGCAGCTCTGGGCAAGAAATAATCATAAGCACTGGGTTGGAAACAGTAGAAGCTTTGGCCTTTGAACCACTCAGCCAGTTGCTGTACTGGGTCAATGCTGGGATTCCCAAAATTGAG
Seq C2 exon
GTTGCCAATCCGGATGGAGACCTGCGACTCACTGTCCTCAACTCCTCCGTCCTCGAGCGACCCAGGGCCCTTGCACTGGTGCCCCGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006598_MULTIEX1-1/5=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PU(33.3=22.4)
A:
PF0005812=Ldl_recept_b=PD(61.5=54.5),PF0005812=Ldl_recept_b=PU(31.7=29.5)
C2:
PF0005812=Ldl_recept_b=PD(63.4=83.9),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTTCATCCTGTACGCCAC
R:
ACCAGTGCAAGGGCCCTG
Band lengths:
246-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]