DreEX6076181 @ danRer10
Exon Skipping
Gene
ENSDARG00000013892 | sorl1
Description
sortilin-related receptor, L(DLR class) A repeats containing [Source:ZFIN;Acc:ZDB-GENE-050208-22]
Coordinates
chr15:21639926-21642450:-
Coord C1 exon
chr15:21642278-21642450
Coord A exon
chr15:21640101-21640232
Coord C2 exon
chr15:21639926-21640017
Length
132 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTTCTTCTTTTACAGAGA
3' ss Score
10.89
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGAGTAATGAGTTTATCCTGTATGCTGTGAGGAACTCCATCCACCGCTATGACCTGGCCTCTGGCACAGACCAGCAGCTGCCTCTCACGGGTCTTCACGAGGCTGTGGCACTGGACTTTGATTATGAGAAGAACTGCCTGTACTGGGCGGATATTTCGCTGGACACCATACAG
Seq A exon
AGACTGTGTATGAATGGAAGCTCTGGACAGGAAGTGATTGTCAAAAGGGACTTGCAAAATGTGGAGGCGCTGTCGTTTGACCCCATCAGCCGATTGCTTTATTGGGTGGATGCAGGTGCACAGAAGATTGAG
Seq C2 exon
GTGTCCAACTCTGATGGAGACCTGAGACGCACTCTGGTCAACTCTTCAGTGGTGGACCAGCCTCGAGCCCTGGCACTCATGCCAGCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013892-'19-23,'19-22,20-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PU(31.0=22.4)
A:
PF0005812=Ldl_recept_b=PD(64.3=61.4),PF0005812=Ldl_recept_b=PU(31.0=29.5)
C2:
PF0005812=Ldl_recept_b=PD(64.3=87.1),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTTATCCTGTATGCTGTGAGG
R:
ATGAGTGCCAGGGCTCGAG
Band lengths:
246-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]