BtaEX6058786 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014611 | SORL1
Description
Bos taurus sortilin-related receptor, L(DLR class) A repeats containing (SORL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192757]
Coordinates
chr15:32680185-32685082:+
Coord C1 exon
chr15:32680185-32680357
Coord A exon
chr15:32681398-32681529
Coord C2 exon
chr15:32684991-32685082
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTTCTGTCTCTTTAGCGC
3' ss Score
10.57
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
AGGAGAACGAGTTCATCTTGTACGCTATGCGCAAGTCCATCCATCGCTATGACCTGGCCTCGGGGGCCACCGAGCAGCTGCCCCTCACCGGGCTGCGGTCAGCGGTGGCCCTGGACTTCGACTATGACCGCAACTGCTTGTACTGGTCCGACCTGGCCTTGGACGTCATCCAG
Seq A exon
CGCCTCTGTTTAAACGGGAGTACGGGGCAGGAGGTGATCGTCAATTCTGGCCTGGAGACAGTAGAAGCCTTGGCTTTTGAACCCCTCAGCCAGTTACTTTACTGGGTGGATTCTGGCTTCAAAAAGATTGAG
Seq C2 exon
GTGGGGCATCCAGACGGCGACTTCCGCCTCACTATTGTCAATTCCTCTGTGCTCGATCGACCCAGGGCTCTGGTCCTCGTACCTCAAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014611-'45-27,'45-26,46-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005812=Ldl_recept_b=PU(31.7=29.5)
C2:
PF0005812=Ldl_recept_b=PD(63.4=83.9),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGCGCAAGTCCATCCAT
R:
CCATCTTGAGGTACGAGGACCA
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]