MmuEX6065146 @ mm9
Exon Skipping
Gene
ENSMUSG00000049313 | Sorl1
Description
sortilin-related receptor, LDLR class A repeats-containing [Source:MGI Symbol;Acc:MGI:1202296]
Coordinates
chr9:41841648-41845304:-
Coord C1 exon
chr9:41845132-41845304
Coord A exon
chr9:41843526-41843657
Coord C2 exon
chr9:41841648-41841739
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTACATCTTTCTCTTCCTAGCGT
3' ss Score
9.45
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
AAGAGAATGAGTTCATCCTATACGCCATGCGCAAGTCCATCTACCGCTACGACTTGGCCTCGGGAGCCACAGAGCAGCTTCCTCTCTCGGGGCTGCGGGCGGCTGTGGCCCTGGACTTTGACTATGAACGCAACTGCTTGTATTGGTCTGACCTGGCGCTGGACACCATCCAG
Seq A exon
CGTCTCTGCTTGAACGGGAGCACAGGGCAGGAGGTGATCATCAATTCCGGCCTGGAGACCGTGGAGGCTTTGGCCTTCGAACCCCTCAGCCAATTACTTTACTGGGTGGATGCCGGCTTTAAAAAGATCGAG
Seq C2 exon
GTAGCTAATCCAGATGGTGACTTCCGACTGACAATCGTCAATTCCTCTGTGCTTGATCGACCCAGGGCTTTAGTCCTTGTACCCCAAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049313-'22-18,'22-17,23-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005812=Ldl_recept_b=PU(31.7=29.5)
C2:
PF0005812=Ldl_recept_b=PD(63.4=83.9),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTCATCCTATACGCCATGC
R:
ACAAGGACTAAAGCCCTGGGT
Band lengths:
246-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: