GgaEX0009696 @ galGal3
Exon Skipping
Gene
ENSGALG00000006804 | ODF2L
Description
NA
Coordinates
chr8:16706241-16707804:+
Coord C1 exon
chr8:16706241-16706303
Coord A exon
chr8:16706673-16706744
Coord C2 exon
chr8:16707688-16707804
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCTCCTTCATGAAGAGT
3' ss Score
5.55
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATAGACGGCAAAAACATTGAAGCTTTGATACAGAAGTTAAGTGAAAATGAAACCCACAATACG
Seq A exon
AGTCTCAGGAGAAAAATAGTAGAAAGAGAAGAACACATTAAAGAACTTTCATCCAGGATTCAGCTTAAAAAA
Seq C2 exon
GTCCCTGTACTGAAGGAAGAGTATCTATCAAGACCAGTAAACACAATTGAAGCTCATCTGCAGTATCAGATTCAAAGAAAAGAAGTGGAAAATGATGAATTAAGGCTGAAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804-'10-13,'10-12,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.095 A=0.208 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGGCAAAAACATTGAAGCT
R:
TGTGTTTTCAGCCTTAATTCATCA
Band lengths:
177-249
Functional annotations
There are 0 annotated functions for this event