MmuEX6074542 @ mm10
Exon Skipping
Gene
ENSMUSG00000028256 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:MGI Symbol;Acc:MGI:1098600]
Coordinates
chr3:145127831-145129006:+
Coord C1 exon
chr3:145127831-145127890
Coord A exon
chr3:145128010-145128081
Coord C2 exon
chr3:145128890-145129006
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTACCTGTGTTTTCCTGAAGAAC
3' ss Score
7.43
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
ATAGGAGACAGCTTGCTATGCTTGTTGAAGGATCTCAGTGACAATGAAAGTGAGAACAGA
Seq A exon
AACCTTGAGGAAAAAGTACTTGAAAAGGAGACCTATATCCGTGAACTCTCGTGTCTGTTTCAGAATGAAAAG
Seq C2 exon
GAAAGTGCTTTGAAAGCAAACAGGCTTTCTCAATCAGTCAAAGTAGTGCACGATCGTCTACAGCGCCAAATTCAGAAGAGGGAAGCTGAGAATGAAAAGCTAAAAGAACATGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028256-'20-11,'20-10,21-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.068 C2=0.127
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACAGCTTGCTATGCTTGT
R:
TGTTCTTTTAGCTTTTCATTCTCAGC
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types